GDI Starter Kit author community
The following is the list of contributors to the GDI Starter Kit initially based on attendance at the GDI Pillar II workshop held 8 - 10 March 2023. The number of contributors will grow with the development progress of the Starter Kit.
The Starter Kit is accessible here:
| Name | Organisation |
|---|---|
| Belgium | |
| Dilza Campos | VIB |
| Emilie Cauët | Sciensano |
| Frederik Coppens | VIB |
| Croatia | |
| Filip Rokić | Ruđer Bošković Institute |
| Oliver Vugrek | Ruđer Bošković Institute |
| Czech Republic | |
| Dominik Frantisek Bucik | MUNI |
| Jaroslav Juracek | MUNI |
| Luděk Matyska | Masaryk University |
| Martin Kuba | MUNI |
| Matej Antol | Masaryk University |
| Lukáš Hejtmánek | MUNI |
| Denmark | |
| Troels Rasmussen | Danish National Genome Centre |
| Estonia | |
| Karl-Martin Voovere | UTARTU |
| Liis Lemsalu | University of Tartu |
| Markus Marandi | UTARTU |
| Martti Tamm | University of Tartu |
| Vladislav Tuzov | UTARTU |
| Finland | |
| Dylan Spalding | CSC |
| Jaakko Leinonen | CSC |
| Joonatan Mäkinen | CSC |
| Meeri Hakala | CSC |
| Teemu Kataja | CSC |
| Tero Hiekkalinna | Finnish Institute for Health and Welfare |
| Timo Nurminen | CSC |
| Tommi Nyrönen | CSC |
| France | |
| David Salgado | IFB/ELIXIR-FR/INSERM |
| Germany | |
| Luiz Gadelha | DKFZ |
| Oliver Kohlbacher | University of Tübingen |
| Ireland | |
| Aedin Culhane | University of Limerick |
| Italy | |
| Domenico Coviello | IRCCS Giannina Gaslini Institute |
| Francesco Andrea Causio | UCSCRome |
| Matteo Chiara | CNR |
| Latvia | |
| Ivars Silamikelis | LBMC |
| Luxembourg | |
| Christophe Trefois | University of Luxembourg |
| Wei Gu | University of Luxembourg/ELIXIR=LU |
| Yohan Jarosz | University of Luxembourg |
| Netherlands | |
| Gerieke Been | UMC Groningen |
| Rob Hooft | Health-RI |
| Sandi Cimerman | UMC Groningen |
| Norway | |
| Eivind Hovig | University of Oslo |
| Joshua Baskaran | University of Oslo |
| Kjell Petersen | University of Bergen |
| Parisa Tejari | University of Bergen |
| Portugal | |
| Ana Teresa Freitas | Instituto Superior Tecnico |
| Hugo Martiniano | INSA |
| Jorge Miguel Ferreira da Silva | BioData.pt |
| Jorge Oliveira | BioData.pt |
| Slovenia | |
| Cene Skubic | University of Ljubljana, Faculty of Medicine |
| Marko Ferme | University of Maribor |
| Milan Ojsteršek | University of Maribor |
| Spain | |
| Albert Hornos Vidal | Barcelona Supercomputing Center (BSC-CNS) |
| Jordi Rambla | CRG |
| Sergi Beltran | CNAG-CRG |
| Sweden | |
| Anna Hagwall | Uppsala University/NBIS |
| Bengt Persson | Uppsala University/NBIS |
| Dimitris Bampalikis | Uppsala University/NBIS |
| Jessica Lindberg | Uppsala University/NBIS |
| Joakim Bygdell | Uppsala University/NBIS |
| Johan Viklund | Uppsala University/NBIS |
| Jonas Hagberg | Stockholm University/NBIS |
| Markus Englund | Uppsala University/NBIS |
| Konstantinos Koumpouras | Uppsala University/NBIS |
| Martin Norling | Uppsala University/NBIS |
| Nanjiang Shu | Stockholm University/NBIS |
| Alex Aperis | Uppsala University/NBIS |
| Andreas Kähäri | Uppsala University/NBIS |
| ELIXIR | |
| Jonathan Tedds | |
| Juan Arenas Marquez | |
| Melissa Konopko | |
GDI Products
GDI products are in the GDI Github repository, but made use of the following repositories:
| Product | Base / Forked Repo |
|---|---|
| Beacon | https://github.com/ga4gh-beacon/beacon-v2 |
| Beacon Network | https://gitlab.bsc.es/inb/ga4gh/beacon-network-v2n https://github.com/CSCfi/beacon-network |
| Containerised computation | https://github.com/CERIT-SC/funnel-gdi http://cerit.io/gdi/funnel:v0.12 |
| htsget | https://github.com/ga4gh/htsget-refserver#setup---native https://github.com/NBISweden/htsget-refserver |
| LS Login | https://lifescience-ri.eu/ls-login/ |
| REMS | https://github.com/CSCfi/rems |
| Storage and Interfaces | https://github.com/neicnordic/neic-sda/ |
| Synthetic Data | https://ega-archive.org/studies/EGAS00001005702 |
